Discovery of Potent and Selective 2-(Benzylthio)pyrimidine-based DCN1-UBC12 Inhibitors for Anticardiac Fibrotic Effects

J Med Chem. 2022 Jan 13;65(1):163-190. doi: 10.1021/acs.jmedchem.1c01207. Epub 2021 Dec 23.

Abstract

DCN1, a co-E3 ligase, interacts with UBC12 and activates cullin-RING ligases (CRLs) by catalyzing cullin neddylation. Although DCN1 has been recognized as an important therapeutic target for human diseases, its role in the cardiovascular area remains unknown. Here, we first found that DCN1 was upregulated in isolated cardiac fibroblasts (CFs) treated by angiotensin (Ang) II and in mouse hearts after pressure overload. Then, structure-based optimizations for DCN1-UBC12 inhibitors were performed based on our previous work, yielding compound DN-2. DN-2 specifically targeted DCN1 at molecular and cellular levels as shown by molecular modeling studies, HTRF, cellular thermal shift and co-immunoprecipitation assays. Importantly, DN-2 effectively reversed Ang II-induced cardiac fibroblast activation, which was associated with the inhibition of cullin 3 neddylation. Our findings indicate a potentially unrecognized role of DCN1 inhibition for anticardiac fibrotic effects. DN-2 may be used as a lead compound for further development.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Antifibrotic Agents* / chemistry
  • Antifibrotic Agents* / pharmacology
  • Cullin Proteins / metabolism
  • Drug Discovery*
  • Enzyme Inhibitors* / chemistry
  • Enzyme Inhibitors* / pharmacology
  • Fibroblasts / drug effects
  • Fibroblasts / pathology
  • Fibrosis* / drug therapy
  • Fibrosis* / metabolism
  • Fibrosis* / pathology
  • Heart Diseases* / drug therapy
  • Heart Diseases* / metabolism
  • Heart Diseases* / pathology
  • Intracellular Signaling Peptides and Proteins* / antagonists & inhibitors
  • Male
  • Mice
  • Mice, Inbred C57BL
  • NEDD8 Protein / metabolism
  • Pyrimidines* / chemistry
  • Rats
  • Rats, Sprague-Dawley
  • Ubiquitin-Conjugating Enzymes* / antagonists & inhibitors
  • Ubiquitins

Substances

  • Antifibrotic Agents
  • Cullin Proteins
  • Enzyme Inhibitors
  • Intracellular Signaling Peptides and Proteins
  • NEDD8 Protein
  • Pyrimidines
  • Ubiquitin-Conjugating Enzymes
  • Ubiquitins
  • 2-((4-chlorobenzyl)thio)-4-((1-methyl-1H-tetrazol-5-yl)thio)-6-(3,4,5-trimethoxyphenyl)pyrimidine-5-carbonitrile